Comparison between simulated annealing algorithms and rapid chain delineation in the construction of genetic maps

dc.contributor.authorNascimento, Moysés
dc.contributor.authorCruz, Cosme Damião
dc.contributor.authorPeternelli, Luiz Alexandre
dc.contributor.authorCampana, Ana Carolina Mota
dc.date.accessioned2017-10-24T13:46:02Z
dc.date.available2017-10-24T13:46:02Z
dc.date.issued2009-11-17
dc.description.abstractThe efficiency of simulated annealing algorithms and rapid chain delineation in establishing the best linkage order, when constructing genetic maps, was evaluated. Linkage refers to the phenomenon by which two or more genes, or even more molecular markers, can be present in the same chromosome or linkage group. In order to evaluate the capacity of algorithms, four F2 co-dominant populations, 50, 100, 200 and 1000 in size, were simulated. For each population, a genome with four linkage groups (100 cM) was generated. The linkage groups possessed 51, 21, 11 and 6 marks, respectively, and a corresponding distance of 2, 5, 10 and 20 cM between adjacent marks, thereby causing various degrees of saturation. For very saturated groups, with an adjacent distance between marks of 2 cM and in greater number, i.e., 51, the method based upon stochastic simulation by simulated annealing presented orders with distances equivalent to or lower than rapid chain delineation. Otherwise, the two methods were commensurate through presenting the same SARF distance.en
dc.formatpdfpt-BR
dc.identifier.issn01008455
dc.identifier.urihttps://doi.org/10.1590/S1415-47572010005000033
dc.identifier.urihttp://www.locus.ufv.br/handle/123456789/12331
dc.language.isoengpt-BR
dc.publisherGenetics and Molecular Biologypt-BR
dc.relation.ispartofseriesvol.33, n.2, p. 398-407, Nov. 2010pt-BR
dc.rightsOpen Accesspt-BR
dc.subjectBetter orderpt-BR
dc.subjectGenetic mappingpt-BR
dc.subjectGenomic analysespt-BR
dc.subjectStochastic optimizationpt-BR
dc.titleComparison between simulated annealing algorithms and rapid chain delineation in the construction of genetic mapsen
dc.typeArtigopt-BR

Arquivos

Pacote original

Agora exibindo 1 - 1 de 1
Imagem de Miniatura
Nome:
gmb-33-2-398.pdf
Tamanho:
620.72 KB
Formato:
Adobe Portable Document Format
Descrição:
texto completo

Licença do pacote

Agora exibindo 1 - 1 de 1
Nenhuma Miniatura Disponível
Nome:
license.txt
Tamanho:
1.71 KB
Formato:
Item-specific license agreed upon to submission
Descrição:

Coleções