Use este identificador para citar ou linkar para este item: https://locus.ufv.br//handle/123456789/22153
Tipo: Artigo
Título: The Crambe abyssinica plastome: Brassicaceae phylogenomic analysis, evolution of RNA editing sites, hotspot and microsatellite characterization of the tribe Brassiceae
Autor(es): Lopes, Amanda de Santana
Pacheco, Túlio Gomes
Vieira, Leila do Nascimento
Guerra, Miguel Pedro
Nodari, Rubens Onofre
Souza, Emanuel Maltempi de
Pedrosa, Fábio de Oliveira
Rogalski, Marcelo
Abstract: Crambe abyssinica is an important oilseed crop that accumulates high levels of erucic acid, which is being recognized as a potential oil platform for several industrial purposes. It belongs to the family Brassicaceae, assigned within the tribe Brassiceae. Both family and tribe have been the subject of several phylogenetic studies, but the relationship between some lineages and genera remains unclear. Here, we report the complete sequencing and characterization of the C. abyssinica plastome. Plastome structure, gene order, and gene content of C. abyssinica are similar to other species of the family Brassicaceae. The only exception is the rps16 gene, which is absent in many genera within the family Brassicaceae, but seems to be functional in the tribe Brassiceae, including C. abyssinica. However, the analysis of gene divergence shows that the rps16 is the most divergent gene in C. abyssinica and within the tribe Brassiceae. In addition, species of the tribe Brassiceae also show similar SSR loci distribution, with some regions containing a high number of SSRs, which are located mainly at the single copy regions. Six hotspots of nucleotide divergence among Brassiceae species were located in the single copy regions by sliding window analysis. Brassicaceae phylogenomic analysis, based on the complete plastomes of 72 taxa, resulted in a well-supported and well-resolved tree. The genus Crambe is positioned within the Brassiceae clade together with the genera Brassica, Raphanus, Sinapis, Cakile, Orychophragmus and Sinalliaria. Moreover, we report several losses and gains of RNA editing sites that occurred in plastomes of Brassiceae species during evolution.
Palavras-chave: Plastid molecular markers
Genetic divergence
Extranuclear inheritance
Organellar DNA
Gene function
Oilseeds
Editor: Gene
Tipo de Acesso: Elsevier B.V.
URI: https://doi.org/10.1016/j.gene.2018.05.088
http://www.locus.ufv.br/handle/123456789/22153
Data do documento: 10-Set-2018
Aparece nas coleções:Artigos

Arquivos associados a este item:
Arquivo Descrição TamanhoFormato 
artigo.pdf
  Until 2100-12-31
texto completo2,74 MBAdobe PDFVisualizar/Abrir ACESSO RESTRITO


Os itens no repositório estão protegidos por copyright, com todos os direitos reservados, salvo quando é indicado o contrário.